NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066789_10004759

Scaffold Ga0066789_10004759


Overview

Basic Information
Taxon OID3300005994 Open in IMG/M
Scaffold IDGa0066789_10004759 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5986
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameAlaska, USA
CoordinatesLat. (o)68.6135Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040820Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0066789_100047592F040820GGAGVLLSLADGTQRGSGSIGTDVVAVIVSDDGKTAYVADSSPGDVYAVRLPGLQVAWKQHVGGAPFGLLLHGGRLFVSLFDTTSVVELALASGIKLATHPVPQGPAAMTIDAAGHVVVAGTRGQLNIIDGGRLAAGNGFGVAFAGGQLWSADYERAELVPAGDDHRVGMPLPLFPFWLAAGTGDTLLVAAEGGTEDTDPGGVFSFDTMTGAFVTLATPKDPDQVLQSGSTIFVSAHGERDVLAIQDGRSSAWAKGAAAVALAPDPALGVLVVAVNANE*

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